Chen Yen-Cheng, Miao Zhi-Feng, Yip Kwan-Ling, Cheng Yi-An, Liu Chung-Jung, Li Ling-Hui, Lin Chung-Yen, Wang Jiunn-Wei, Wu Deng-Chyang, Cheng Tian-Lu, Wang Jaw-Yuan, "Gut Fecal Microbiota Transplant in a Mouse Model of Orthotopic Rectal Cancer," Frontier in Oncology, volume 10, pages 2369, October 2020. :::
Hangfei Qi, Virginia Chu, Nicholas C. Wu, Zugen Chen, Shawna Truong, Gurpreet Brar, Sheng-Yao Su, Yushen Du, Vaithilingaraja Arumugaswami, C. Anders Olson, Shu-Hua Chen, Chung-Yen Lin, Ting-Ting Wu, and Ren Sun, "Systematic identification of anti-interferon function on hepatitis C virus genome reveals p7 as an immune evasion protein," Proceedings of the National Academy of Sciences of the United States of America (PNAS), volume 114, number 8, pages 2018–2023, February 2017, Collaboration with team in UCLA, doi: 10.1073/pnas.1614623114 :::
41.
Sheng-Yao Su, Shu-Hwa Chen, I-Hsuan Lu, Yih-Shien Chiang, Yu-Bin Wang, Pao-Yang Chen, Chung-Yen Lin*, "TEA: The Epigenome platform for Arabidopsis methylome study," BMC Genomics, volume 17(S13), pages 1027, December 2016, Tea website: http://tea.iis.sinica.edu.tw :::
42.
Jen-Chieh Lee, Sheng-Yao Su, Chun A, Changou, Rong-Sen Yang, Keh-Sung Tsai, Michael T. Collins, Eric S. Orwoll, Chung-Yen Lin, Shu-Hwa Chen, Shyang-Rong Shih, Chen-Han Lee, Yoshinao Oda, Steven D. Billings, Chien-Feng Li, G. Petur Nielsen, Eiichi Konishi, Fredrik Petersson, Thomas O. Carpenter, Hsuan-Ying Huang, and Andrew L. Folpe, "Characterization of FN1-FGFR1 and Novel FN1-FGF1 Fusion Genes in a Large Series of Phosphaturic Mesenchymal Tumors," Modern Pathology, volume 29, pages 1335-1346, November 2016, (IF: 6.4), collaboration with NTUH, doi:10.1038/modpathol.2016.137 :::
Lin CH, Chen SH,Wang YB, Hsiung CA, Lin CY*, "Precise Genotyping and Recombination Detection in Enterovirus," BMC Genomics, volume 16, number Suppl 12, pages S8, December 2015, Cooperation with Team in NHRI. *:Corresponding Author. (SCI/4.4, BIOTECHNOLOGY & APPLIED MICROBIOLOGY/ Q1) :::
Kuo, C. Y., Chen, C. H., Chen, S. H., Lu, I. H., Lu, Huang, L. C., Lin, C. Y., Lin, Chen, C. Y., Lo, H. F., Jeng, S. T., Chen, L. F. O., "The Effect of Red Light and Far-Red Light Conditions on Secondary Metabolism in Agarwood," BMC Plant Biology, volume 15, pages 139, June 2015, The website for whole results can be found at http://molas.iis.sinica.edu.tw/agarwood (IF: 3.94, Journal ranking: PLANT SCIENCES: 22/199, 11%) :::
Jen-Chieh Lee,Yung-Ming Jeng, Sheng-Yao Su, Chen-Tu Wu, Keh-Sung Tsai, Cheng-Han Lee, Chung-Yen Lin, Jodi M. Carter, Jeng-Wen Huang, Shu-Hwa Chen, Shyang-Rong Shih, Adrián Mariño-Enríquez, Chih-Chih Chen, Andrew L. Folpe, Yih-Leong Chang and Cher-Wei Liang, "Identification of a Novel FN1-FGFR1 Genetic Fusion as a Frequent Event in Phosphaturic Mesenchymal Tumour," The Journal of Pathology, volume 235, number 4, pages 539-45, March 2015, Collaboration with team in NTU hospital for rare disease (IF: 7.33, Journal ranking: Pathology/Q1: 3/76, 3.9%) :::
51.
Chia-Hao Chin, Shu-Hwa Chen, Hsin-Hung Wu, Chin-Wen Ho, Ming-Tat Ko *, and Chung-Yen Lin, "cytoHubba: a Cytoscape Plug-in for Hub Object Analysis in Network Biology," BMC Systems Biology, volume 8, number Suppl 4, pages S11, December 2014, Plug-in for cytoscape, accumulated download over 7,500 times (IF: 2.85, Journal ranking: MATHEMATICAL & COMPUTATIONAL BIOLOGY/Q1: 7/52, 13.5%) :::
Roland Gilbert Remenyi , Hangfei Qi , Sheng-Yao Su , Zugen Chen , Nicholas C. Wu , Vaithilingaraja Arumugaswami , Shawna Truong , Virginia Chu , Tamar Stokelman , Hung-Hao Lo , C. Anders Olson ,Ting-Ting Wu , Shu-Hwa Chen , Chung-Yen Lin, Ren Sun, "A Comprehensive Functional Map of the Hepatitis C Virus Genome Provides a Resource for Probing Viral Proteins)," mBio, volume 5, number 5, pages e01469-14, September 2014, Collaboration with team in UCLA (IF: 6.85，Journal ranking: MICROBIOLOGY/Q1: 12/119, 10%) :::
Nicholas C Wu, Arthur P Young, Laith Q Al-Mawsawi, C Anders Olson, Jun Feng, Hangfei Qi, Shu-Hwa Chen, I-Hsuan Lu, Chung-Yen Lin, Robert G Chin, Harding H Luan, Nguyen Nguyen, Stanley F Nelson, Xinmin Li, Ting-Ting Wu, Ren Sun, "High-throughput profiling of influenza A virus hemagglutinin gene at single-nucleotide resolution," Scientific Reports, volume 4, pages 4942, May 2014, Collaboration with scientists in UCLA (IF: 5.06，Journal ranking: MULTIDISCIPLINARY SCIENCES/Q1: 5/55, 9%) :::
Chia-Hao Chin, Shu-Hwa Chen, Chun-Yu Chen, Chao. A Hsiung, Chin-Wen Ho, Ming-Tat Ko and Chung-Yen Lin, "Spotlight: Assembly of Protein Complexes by Integrating Graph Clustering Methods," Gene, volume 518, number 1, pages 42-51, April 2013, Collaboration with scientists in NHRI and NCU (IF: 2.08, http://hub.iis.sinica.edu.tw/spotlight,) :::
59.
Lei-Chin Chen, Jung-Chi Chen, Jwu-Ching Shu, Chien-Yen Chen, Ssu-Ching Chen, Shu-Hwa Chen, Chun-Yen-Lin, Chi-Yu Lu, and Chien-Cheng Chen, "Interplay of RsbM and RsbK controls the theta B activity of Bacillus cereus," Environmental Microbiology, volume 14, number 10, pages 2788–2799, October 2012, Collaborated with team in NKNU (SCI/ 5.54, , MICROBIOLOGY/Q1) :::
Chin-I Chang, Pei-Hsin Hung, Chia-Che Wu, Ta Chih Cheng, Jyh-Ming Tsai, King-Jung Lin and Chung-Yen Lin, "Simultaneous Detection of Multiple Fish Pathogens Using a Naked-Eye Readable DNA Microarray," Sensors, volume 12, number 3, pages 2710-2728, February 2012, Collaborated with team in Fisheries Research Institute (SCI/2.05, INSTRUMENTS & INSTRUMENTATION/Q1) :::
Shiao, Y.M., Lee, C. C., Hsu, Y. H., Huang, S. F., Lin, C. Y., Li, L. H., Fann, C. S. J., Tsai, C. Y., Tsai, S. F., Chiu, H. C., "Ectopic and High CXCL13 Chemokine Expression in Myasthenia Gravis with Thymic Lymphoid Hyperplasia," Journal of Neuroimmunology, volume 165, number 10, pages 62-, April 2010, Collaborated works with wet lab teams in NHRI and YM University, Available online 11 March 2010 (SCI/2.84, IMMUNOLOGY/Q2 ) ::::::
Tao-Wei Huang, Chung-Yen Lin* and Cheng-Yan Kao*, "Reconstruction of human protein interolog network using evolutionary conserved network," BMC Bioinformatics, volume 8, number 152, pages 1-14, May 2007, (SCI/4.96)(*: Corresponding Authors) :::
71.
Tom Strachan and Andrew P. Read (Translated in Chinese by Chung-Yen Lin et al,), "Human Molecular Genetics 3," Garland Science, January 2007, ISBN: 957-616-895-3
Jiang S. S., Chang I. S., Huang L. W., Chen P. C., Wen C. C., Liu S. C., Chien L. C., Lin C. Y., Hsiung C. A., Juang J. L., "Temporal Transcription Program of Recombinant Autographa californica Multiple Nucleopolyhedrosis Virus.," Journal of Virology, volume 80, pages 8989-8999, July 2006, (SCI/ 5.178) :::
74.
Wen, C. C., Wu, Y. J., Huang, Y. H., Chen, W. C., Liu, S. C., Jiang, S. S., Juang, J. L., Lin, C. Y., Fang, W. T., Hsiung, C. A., Chang, I. S., "A Bayes Regression Approach to Array-CGH Data," Statistical Applications in Genetics and Molecular Biology, volume 5, number 1, May 2006, (SCI/1.77) :::
75.
Chang, C. C., Lin, H. C., Lin, I. P., Chang, T. Y., Chen, H. H., Chen, W. H. Cheng, C. H., Lin, C. Y. Liu, S. M. Chang, C. C. Chaw, S. M., "The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with That of Grasses and Its Phylogenetic Implications.," Molecular Biology and Evolution, volume 23, pages 279 - 291, April 2006, (SCI/ 6.355) :::
76.
Pan W. H., Lynn K. S., Chen C. H., Wu Y. L., Lin C. Y., Chang H.Y., "Using endophenotypes for pathway clusters to map complex disease genes.," Genetic Epidemiology, volume 30, number 2, pages 143-154, March 2006, (SCI/5.42) :::
Chen, S. H., Lin, C. Y. and Kuo, C. M., "In silico Analysis of the Crustacean Hyperglycemic Hormone Family," Marine Biotechnology, volume 7, number 3, pages 193-206, June 2005, (SCI/ 2.54) :::
Chen, S. H., Lin, C. Y., Huang, F. L. and Kuo, C. M., "Cloning of Two Crustacean Hyperglycemic Hormone Isoforms from the Freshwater Giant Prawn, Macrobrachium rosenbergii: Evidence of Alternative Splicing," Marine Biotechnology, volume 6, number 1, pages 83-94, October 2004, (SCI/2.54) :::
81.
Li, L.H., Li, J. C., Lin, Y. F., Lin, C. Y., Chen, C.Y., Tsai, S. F., "Genomic Shotgun Array: A Procedure Linking Large-Scale DNA Sequencing with Regional Transcript Mapping.," Nucleic Acids Research, volume 32, number 3, pages 27-35, February 2004, (SCI/ 7.62) :::
82.
Lin, C. Y., Chen, S. H, Lo, C.Z., Cho, C.S., Hsiung, C. A., "Primer Design Assistant (PDA): a Web-based Primer Design Tool.," Nucleic Acids Research, volume 31, pages 3751-3754, July 2003, (SCI/ 7.62) (Access URL : http://dbb.nhri.org.tw/primer/) :::
